
pmid: 10745995
Abstract Motivation: IMGT, the international ImMunoGene- Tics database (http://imgt.cines.fr:8104), created by M.-P. Lefranc, is an integrated database specializing in antigen receptors (immunoglobulins and T-cell receptors) and major histocompatibility complex (MHC) of all vertebrate species. IMGT accurate immunogenetics data are based on the standardization of the biological knowledge provided by the ‘ImMunoGeneTics’ IMGT-ONTOLOGY. The IMGT-ONTOLOGY describes the classification and specification of terms needed for immunogenetics and bioinformatics. IMGT-ONTOLOGY covers four main concepts: ‘IDENTIFICATION’, ‘DESCRIPTION’, ‘CLASSIFICATION’ and ‘OBTENTION’. These concepts allow an extensive and standardized description and characterization of immunoglobulin and T-cell receptor data. The controlled vocabulary and the annotation rules are indispensable to ensure accuracy, consistency and coherence in IMGT. IMGT-ONTOLOGY allows scientists and clinicians to use, for the first time, identical terms with the same meaning in immunogenetics. It provides a semantic repository that will improve interoperability between specialist and generalist databases. Availability: Controlled vocabulary and annotation rules are described in the IMGT Scientific chart from the IMGT Marie-Paule page at http://imgt.cines.fr:8104 Contact: lefranc@ligm.igh.cnrs.fr
Quality Control, Databases, Factual, Reproducibility of Results, Systems Integration, User-Computer Interface, Vocabulary, Controlled, Artificial Intelligence, Software Design, [SDV.IMM.IA] Life Sciences [q-bio]/Immunology/Adaptive immunology, Immunogenetics, Animals, Humans, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]
Quality Control, Databases, Factual, Reproducibility of Results, Systems Integration, User-Computer Interface, Vocabulary, Controlled, Artificial Intelligence, Software Design, [SDV.IMM.IA] Life Sciences [q-bio]/Immunology/Adaptive immunology, Immunogenetics, Animals, Humans, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]
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