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Briefings in Bioinformatics
Article . 2021 . Peer-reviewed
License: CC BY
Data sources: Crossref
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Briefings in Bioinformatics
Article
License: CC BY
Data sources: UnpayWall
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DBLP
Article . 2022
Data sources: DBLP
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Updates to HCOP: the HGNC comparison of orthology predictions tool

Authors: Bethan Yates; Kristian A. Gray; Tamsin E. M. Jones; Elspeth A. Bruford;

Updates to HCOP: the HGNC comparison of orthology predictions tool

Abstract

AbstractMultiple resources currently exist that predict orthologous relationships between genes. These resources differ both in the methodologies used and in the species they make predictions for. The HGNC Comparison of Orthology Predictions (HCOP) search tool integrates and displays data from multiple ortholog prediction resources for a specified human gene or set of genes. An indication of the reliability of a prediction is provided by the number of resources that support it. HCOP was originally designed to show orthology predictions between human and mouse but has been expanded to include data from a current total of 20 selected vertebrate and model organism species. The HCOP pipeline used to fetch and integrate the information from the disparate ortholog and nomenclature data resources has recently been rewritten, both to enable the inclusion of new data and to take advantage of modern web technologies. Data from HCOP are used extensively in our work naming genes as the Vertebrate Gene Nomenclature Committee (https://vertebrate.genenames.org).

Keywords

Computational Biology, Sequence Homology, Genomics, Web Browser, Workflow, Databases, Genetic, Vertebrates, Problem Solving Protocol, Animals, Humans, Software

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
36
Top 10%
Top 10%
Top 10%
Green
gold