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Deep learning in deep time

Authors: Alexander E. White;

Deep learning in deep time

Abstract

Digitized natural history records, now numbering in the billions (1), span widely across the tree of life and provide the foundation for numerous recent advances in biodiversity research (2, 3). Mechanistic insights are emerging for old questions, including how diversity has expanded and contracted through Earth’s history (4), how species have come to occupy the wide range of ecological roles observed on land and sea alike (5, 6), and how the millions of species on Earth will respond to a rapidly changing climate in the future (7). Fundamentally, such studies require an understanding of both how individual organisms are classified to species and how species are related in their evolutionary history. In deep time, where fossils provide scattered snapshots of historical diversity, taxonomic resolution is particularly elusive. Molecular data are entirely absent, the fossil record contains numerous gaps in time and space, and fossil preservation presents a host of challenges for evaluating the shape and structure of diagnostic anatomical traits. Numerous fossil specimens remain poorly resolved, particularly in their evolutionary relationships to modern taxa, clouding the temporal and geographic resolution of biodiversity in deep time. For widespread ecologically important clades like plants, this limits our ability to reconstruct the dynamics of ancient ecosystems (8). In PNAS, Romero et al. (9) present a deep-learning–based approach for classifying some of the fossil record’s most widely documented yet vexing historical material—fossil pollen (8, 10). Paired with an ecological and climatic understanding of the distributions of plant groups today, taxonomically resolved pollen studies provide an important lens for paleobotanical diversity and data for paleoclimatic inference (8, 10). Romero et al. (9) show how this record can be further … [↵][1]1Email: whiteae{at}si.edu. [1]: #xref-corresp-1-1

Keywords

Microscopy, Deep Learning, Fossils, Commentaries, Pollen, Neural Networks, Computer

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Average
Average
Average
Green
hybrid