AbstractDepression‐focused recharge is a concept proposed to explain groundwater recharge in the prairie regions of North America. Topographic depressions in this hummocky landscape collect blowing snow and snowmelt, and occasional runoff during rainfall events. Wetland ponds that form in these depressions lose water to evaporation and infiltration. Some of this infiltration contributes to groundwater recharge, both to shallow aquifers in the weathered near‐surface, and to underlying confined intertill aquifers. Here we focus on understanding recharge to the confined aquifers, which supply water for farms and rural communities. The isotopic composition of water in these aquifers shows little or no evaporative enrichment and is inconsistent with the average isotopic composition of the ponds. This observation appears to contradict the depression‐focused recharge model. In this field study, we examine the isotopic composition of diverse types of wetland ponds and groundwater at the St. Denis National Wildlife Area, Saskatchewan, Canada. We use hydraulic head data to identify potential recharge and discharge ponds. Water in permanent recharge ponds that do not dry out every year have distinctly different isotopic signatures from the aquifers, suggesting that they cannot be the dominant source of recharge. Water in ephemeral recharge ponds, which are small and dry out quickly, have isotopic signatures identical to those of aquifers. We propose that ephemeral recharge ponds are the dominant source of depression‐focused groundwater recharge in the prairies. We discuss why permanent recharge ponds may not be the main source of groundwater recharge and summarize our findings in a revised conceptual model.