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The split-and-drift random graph, a null model for speciation

Authors: Bienvenu, François; Débarre, Florence; Lambert, Amaury;

The split-and-drift random graph, a null model for speciation

Abstract

We introduce a new random graph model motivated by biological questions relating to speciation. This random graph is defined as the stationary distribution of a Markov chain on the space of graphs on $\{1, \ldots, n\}$. The dynamics of this Markov chain is governed by two types of events: vertex duplication, where at constant rate a pair of vertices is sampled uniformly and one of these vertices loses its incident edges and is rewired to the other vertex and its neighbors; and edge removal, where each edge disappears at constant rate. Besides the number of vertices $n$, the model has a single parameter $r_n$. Using a coalescent approach, we obtain explicit formulas for the first moments of several graph invariants such as the number of edges or the number of complete subgraphs of order $k$. These are then used to identify five non-trivial regimes depending on the asymptotics of the parameter $r_n$. We derive an explicit expression for the degree distribution, and show that under appropriate rescaling it converges to classical distributions when the number of vertices goes to infinity. Finally, we give asymptotic bounds for the number of connected components, and show that in the sparse regime the number of edges is Poissonian.

added Proposition 2.4 and formal proofs of Proposition 2.3 and 2.6

Country
France
Keywords

[MATH.MATH-PR] Mathematics [math]/Probability [math.PR], Species problem, Random graphs (graph-theoretic aspects), duplication-divergence, Dynamical network, dynamical network, Problems related to evolution, Discrete-time Markov processes on general state spaces, Exchangeability for stochastic processes, [SDV.BID.EVO] Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE], FOS: Mathematics, Vertex duplication, Mathematics - Combinatorics, 05C80, 92D15 (Primary) 60J27, 60J80, 05C07 (Secondary), Quantitative Biology - Populations and Evolution, Duplication-divergence, Probability (math.PR), Populations and Evolution (q-bio.PE), coalescent, [MATH.MATH-CO] Mathematics [math]/Combinatorics [math.CO], Population dynamics (general), FOS: Biological sciences, species problem, Coalescent, Point processes (e.g., Poisson, Cox, Hawkes processes), genetic drift, Combinatorics (math.CO), Genetic drift, vertex duplication, Mathematics - Probability

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
4
Average
Average
Average
Green
bronze