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On the readability of overlap digraphs

Authors: Rayan Chikhi; Paul Medvedev; Martin Milanic; Sofya Raskhodnikova;

On the readability of overlap digraphs

Abstract

We introduce the graph parameter readability and study it as a function of the number of vertices in a graph. Given a digraph D, an injective overlap labeling assigns a unique string to each vertex such that there is an arc from x to y if and only if x properly overlaps y. The readability of D is the minimum string length for which an injective overlap labeling exists. In applications that utilize overlap digraphs (e.g., in bioinformatics), readability reflects the length of the strings from which the overlap digraph is constructed. We study the asymptotic behaviour of readability by casting it in purely graph theoretic terms (without any reference to strings). We prove upper and lower bounds on readability for certain graph families and general graphs

This is a full version of a conference paper of the same title at the 26th Annual Symposium on Combinatorial Pattern Matching (CPM 2015)

Countries
France, France, Slovenia, France
Keywords

FOS: Computer and information sciences, graph parameter, Discrete Mathematics (cs.DM), stringology, Applications of graph theory, Directed graphs (digraphs), tournaments, overlap graph, info:eu-repo/classification/udc/519.17, Computer Science - Data Structures and Algorithms, FOS: Mathematics, Discrete Mathematics and Combinatorics, Mathematics - Combinatorics, Quantitative Biology - Genomics, Data Structures and Algorithms (cs.DS), [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM], prekrivno označevanje, Genomics (q-bio.GN), overlap labeling, bipartite graphs, Applied Mathematics, bioinformatics, dvodelni graf, [INFO.INFO-DM] Computer Science [cs]/Discrete Mathematics [cs.DM], FOS: Biological sciences, bipartite graph, readability, Combinatorics (math.CO), berljivost, Computer Science - Discrete Mathematics

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Average
Average
Average
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