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https://doi.org/10.1...arrow_drop_down
https://doi.org/10.1007/bfb003...
Part of book or chapter of book . 1996 . Peer-reviewed
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DBLP
Conference object . 2017
Data sources: DBLP
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Simple folding model for HP lattice proteins

Authors: Erich Bornberg-Bauer;

Simple folding model for HP lattice proteins

Abstract

Combining the model of unguided, cotranslational folding of a nascent peptide chain with HP lattice proteins we designed a fast and straightforward folding algorithm. In choosing the search depth that is “looked ahead” at each chain growth step we tradeoff conformational search and accuracy against computational demands. We test the performance by folding short sequences with known, unique ground states. We find a success-rate, large enough to consider cotranslational foldability as a potential evolutionary fitness criterion. Characterizing the sequence to structure relation we find analogies to ground state ensembles: structure fitness landscapes are very rugged and there are few frequent and many rare structures. We conclude that our simple folding model is well suited for a realistic approximation of ensemble properties that we consider as crucial to understand the evolutionary dynamics of biopolymers.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
2
Average
Average
Average
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