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Conference object . 1997
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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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Conference object . 1997
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https://doi.org/10.1007/bfb002...
Part of book or chapter of book . 1998 . Peer-reviewed
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Genetic algorithms for genetic mapping

Authors: Gaspin, Christine; Schiex, Thomas;

Genetic algorithms for genetic mapping

Abstract

Constructing genetic maps is a prerequisite for most in-depth genetic studies of an organism. The problem of constructing reliable genetic maps for any organism can be considered as a complex optimization problem with both discrete and continuous parameters. This paper shows how genetic algorithms can been used to tackle this problem on simple pedigree. The approach is embodied in an hybrid algorithm that relies on the statistical optimization algorithm EM to handle the continuous variables while genetic algorithms handle the discrete side. The efficiency of the approach lies critically in the introduction of greedy local search in the fitness evaluation of the genetic algorithm, using a neighborhood structure which has been inspired by an analogy between the marker ordering problem and a variant of the famous traveling salesman problem. This shows how genetic algorithms can easily benefit from existing efficient neighborhood stuctures developed for local search algorithms. The resulting program, called CARTHAGENE, has been applied both to real data, from a small parasitoid wasp, and simulated data. In both cases, it compares quite favorably to existing packages.

Country
France
Keywords

[SDV] Life Sciences [q-bio], GENETIQUE

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    popularity
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
6
Average
Top 10%
Average
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