A well-developed aerenchyma is a major characteristic of aquatic plants. However, because such tissues are also found in wetland and terrestrial plants, it is not always possible to use their presence or absence to distinguish aquatic species. Whereas patterns of aerenchyma in roots have been studied in detail, those of the shoots have not. We collected and tested 110 species of various aquatic and wetland plants, including ferns (5), basal angiosperms (5), monocots (65), and eudicots (35). Three common and two rare types of aerenchyma were observed in their roots (three schizogeny and two lysigeny), plus five types of schizogeny in their shoots. We re-confirmed that, although a well-developed aerenchyma is more common in most organs of aquatic plants than in wetland plants, this presence cannot be used as strict evidence for the aquatic quality of vascular plants. Here, aerenchyma patterns were stable at the genus level, and the consistency of pattern was stronger in the roots than in the shoots. Furthermore, significant trends were verified in several higher taxa, and those consistencies of patterns partially coincided with their phylogeny.