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Virus Genes
Article
License: implied-oa
Data sources: UnpayWall
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PubMed Central
Article . 1990
Data sources: PubMed Central
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Virus Genes
Article . 1990 . Peer-reviewed
License: Springer Nature TDM
Data sources: Crossref
Virus Genes
Article . 1990
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RNA pseudoknots: Translational frameshifting and readthrough on viral RNAs

Authors: Ten Dam, Edwin B.; Pleij, Cornelius W. A.; Bosch, Leendert;

RNA pseudoknots: Translational frameshifting and readthrough on viral RNAs

Abstract

Ribosomal frameshifting on retroviral RNAs has been proposed to be mediated by slippage of two adjacent tRNAs into the -1 direction at a specific heptanucleotide sequence. Here we report a computer-aided analysis of the structure around the established or putative frameshift sites in a number of retroviral, coronaviral, toroviral, and luteoviral RNAs and two dsRNA yeast viruses. In almost all cases a stable hairpin was predicted four to nine nucleotides downstream of the shifty heptanucleotide. More than half of the resulting hairpin loops give rise to potential pseudoknotting with sequences downstream of this hairpin. Especially in the case of the shifty heptanucleotides U UUA AAC and G GGA AAC, stable downstream pseudoknots are present. Indications were also found for the presence of pseudoknots downstream of amber stop condons at readthrough sites in some retroviral RNAs.

Related Organizations
Keywords

Electronic Data Processing, Base Sequence, Molecular Sequence Data, Article, Retroviridae, Suppression, Genetic, Protein Biosynthesis, Mutation, Nucleic Acid Conformation, RNA, Viral, Codon

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    popularity
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    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
196
Top 10%
Top 1%
Top 1%
Green
hybrid