Whilst a decisive role of the particle-matrix interphase on the mechanical properties of nanoparticle-filled polymers has been demonstrated in the last years, the arbitrary design of this interphase remains a very challenging goal. In principle, this could be realized via an appropriate surface modification of the nanofiller prior to its incorporation in the polymer. For most systems, such as for boehmite nanofillers, however, the interaction of organic modifiers with the particle surface has not been studied in detail, and only single studies are known rather than systematic investigations on the effects of different chemical functions anchored on the particle surface. In this chapter, we present an extensive study on the binding of APTES, a common silane surface modifier, with boehmite, and show that thermogravimetric analysis (TGA) coupled with mass spectrometry (MS) is a convenient and highly suitable method to elucidate the ligand binding in detail. Furthermore, a two-step coupling strategy is presented, demonstrating that based on APTES anchored to the particle surface, the condensation of various carboxylic acids can be utilized to enable highly diverse chemical properties of the nanofillers, which leads to very different particle-matrix interactions in the nanocomposites.