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Protein Science
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PubMed Central
Other literature type . 2011
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Protein Science
Article . 2011 . Peer-reviewed
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Protein Science
Article . 2011 . Peer-reviewed
Data sources: Crossref
Protein Science
Article . 2011
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Modeling of the Toll‐like receptor 3 and a putative Toll‐like receptor 3 antagonist encoded by the African swine fever virus

Authors: Henriques, Elsa S; Brito, Rui M M; Soares, Hugo; Ventura, Sónia; de Oliveira, Vivian L; Parkhouse, R Michael E;

Modeling of the Toll‐like receptor 3 and a putative Toll‐like receptor 3 antagonist encoded by the African swine fever virus

Abstract

AbstractAfrican swine fever virus (ASFV) is a large double‐stranded DNA virus responsible for a lethal pig disease, to which no vaccine has ever been obtained. Its genome encodes a number of proteins involved in virus survival and transmission in its hosts, in particular proteins that inhibit signaling pathways in infected macrophages and, thus, interfere with the host's innate immune response. A recently identified novel ASFV viral protein (pI329L) was found to inhibit the Toll‐like receptor 3 (TLR3) signaling pathway, TLR3 being a crucial “danger detector.” pI329L has been predicted to be a transmembrane protein containing extracellular putative leucine‐rich repeats similar to TLR3, suggesting that pI329L might act as a TLR3 decoy. To explore this idea, we used comparative modeling and other structure prediction protocols to propose (a) a model for the TLR3–Toll‐interleukin‐1 receptor homodimer and (b) a structural fold for pI329L, detailed at atomistic level for its cytoplasmic domain. As this later domain shares only remote sequence relationships with the available TLR3 templates, a more complex modeling strategy was employed that combines the iterative implementation of (multi)threading/assembly/refinement (I‐TASSER) structural prediction with expertise‐guided posterior refinement. The final pI329L model presents a plausible fold, good structural quality, is consistent with the available experimental data, and it corroborates our hypothesis of pI329L being a TLR3 antagonist.

Keywords

Protein Folding, Sequence Homology, Amino Acid, Swine, Molecular Sequence Data, Computational Biology, Membrane Proteins, Molecular Dynamics Simulation, African Swine Fever Virus, Article, Protein Structure, Tertiary, Toll-Like Receptor 3, Viral Proteins, Sequence Analysis, Protein, Animals, Amino Acid Sequence, Sequence Alignment, Signal Transduction

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    popularity
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    Top 10%
    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
15
Top 10%
Average
Average
Green
hybrid