AbstractResearch on soil fertility is presented in the context of runoff agriculture, a venerable farming system that has been used for millennia in arid to semiarid regions, where water is a major limiting resource for crop production. The agroecology of runoff farming was studied with the Zuni to evaluate nutrient and hydrologic processes, management, maize productivity, and soil quality in some of the oldest recognized fields in the United States. This ancient Southwest agriculture has functioned without conventional irrigation or fertilization by tapping into biogeochemical processes in natural watersheds connected to fields. Carefully placed fields are managed on alluvial fans and other valley margin landforms to intercept runoff and associated sediment and organic debris transported from adjoining forested uplands. We report on research to evaluate and link nitrogen and phosphorus, two key nutrients for crop production, in watershed, soil, and crop components of this agroecosystem. Nutrient data have been collected by observational and experimental methods for each component and the transport of nutrients from watershed to field to maize. The condition of Zuni agricultural soils suggests that their knowledge and management of soils contributed to effective conservation. This study and others indicate the need for further long‐term monitoring and experimental research on watersheds, runoff processes, field soils, and crops across a range of arid to semiarid ecosystems. © 2007 Wiley Periodicals, Inc.