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Applying deep neural networks to predict incidence and phenology of plant pests and diseases

Authors: Grünig, Marc; Razavi, Elisabeth; Calanca, Pierluigi; Mazzi, Dominique; Wegner, Jan Dirk; Pellissier, Loïc;

Applying deep neural networks to predict incidence and phenology of plant pests and diseases

Abstract

AbstractA major challenge of agriculture is to improve the sustainability of food production systems in order to provide enough food for a growing human population. Pests and pathogens cause vast yield losses, while crop protection practices raise environmental and human health concerns. Decision support systems provide detailed information on optimal timing and necessity of crop protection interventions, but are often based on phenology models that are time‐, cost‐, and labor‐intensive in development. Here, we aim to develop a data‐driven approach for pest damage forecasting, relying on big data and deep learning algorithms. We present a framework for the development of deep neural networks for pest and pathogen damage classification and show their potential for predicting the phenology of damages. As a case study, we investigate the phenology of the pear leaf blister moth (Leucoptera malifoliella, Costa). We employ a set of 52,322 pictures taken during a period of 19 weeks and establish deep neural networks to categorize the images into six main damage classes. Classification tools achieved good performance scores overall, with differences between the classes indicating that the performance of deep neural networks depends on the similarity to other damages and the number of training images. The reconstructed damage phenology of the pear leaf blister moth matches mine counts in the field. We further develop statistical models to reconstruct the phenology of damages with meteorological data and find good agreement with degree‐day models. Hence, our study indicates a yet underexploited potential for data‐driven approaches to enhance the versatility and cost efficiency of plant pest and disease forecasting.

Country
Switzerland
Related Organizations
Keywords

decision support system, Image classification, Evolution, 530 Physics, Insect pest, Deep neural network, 10231 Department of Astrophysics, Phenological modeling, phenological modeling, Behavior and Systematics, QH540-549.5, Decision support system, Ecology, 11476 Digital Society Initiative, deep neural network, 1105 Ecology, Evolution, Behavior and Systematics, FOS: Biological sciences, insect pest, 2303 Ecology, Decision support system; Deep neural network; Image classification; Insect pest; Phenological modeling, image classification

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Top 10%
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Top 10%
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
28
Top 10%
Top 10%
Top 10%
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gold