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Ecological Applications
Article . 2021 . Peer-reviewed
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Ecological Applications
Article
License: CC BY
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https://doi.org/10.1101/556472...
Article . 2019 . Peer-reviewed
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Estimating individual‐level plant traits at scale

Authors: Sergio Marconi; Sarah J. Graves; Ben G. Weinstein; Stephanie Bohlman; Ethan P. White;

Estimating individual‐level plant traits at scale

Abstract

Abstract Functional ecology has increasingly focused on describing ecological communities based on their traits (measurable features affecting individuals’ fitness and performance). Analyzing trait distributions within and among forests could significantly improve understanding of community composition and ecosystem function. Historically, data on trait distributions are generated by (1) collecting a small number of leaves from a small number of trees, which suffers from limited sampling but produces information at the fundamental ecological unit (the individual), or (2) using remote‐sensing images to infer traits, producing information continuously across large regions, but as plots (containing multiple trees of different species) or pixels, not individuals. Remote‐sensing methods that identify individual trees and estimate their traits would provide the benefits of both approaches, producing continuous large‐scale data linked to biological individuals. We used data from the National Ecological Observatory Network (NEON) to develop a method to scale up functional traits from 160 trees to the millions of trees within the spatial extent of two NEON sites. The pipeline consists of three stages: (1) image segmentation, to identify individual trees and estimate structural traits; (2) an ensemble of models to infer leaf mass area (LMA), nitrogen, carbon, and phosphorus content using hyperspectral signatures, and DBH from allometry; and (3) predictions for segmented crowns for the full remote‐sensing footprint at the NEON sites. The R 2 values on held‐out test data ranged from 0.41 to 0.75 on held‐out test data. The ensemble approach performed better than single partial least‐squares models. Carbon performed poorly compared to other traits ( R 2 of 0.41). The crown segmentation step contributed the most uncertainty in the pipeline, due to over‐segmentation. The pipeline produced good estimates of DBH ( R 2 of 0.62 on held‐out data). Trait predictions for crowns performed significantly better than comparable predictions on pixels, resulting in improvement of R 2 on test data of between 0.07 and 0.26. We used the pipeline to produce individual‐level trait data for ~5 million individual crowns, covering a total extent of ~360 km 2 . This large data set allows testing ecological questions on landscape scales, revealing that foliar traits are correlated with structural traits and environmental conditions.

Keywords

Plant Leaves, Humans, Forests, Plants, Ecosystem, Trees

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
20
Top 10%
Top 10%
Top 10%
hybrid