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Parallel Gaussian Process Surrogate Bayesian Inference with Noisy Likelihood Evaluations

Parallel Gaussian process surrogate Bayesian inference with noisy likelihood evaluations
Authors: Järvenpää, Marko; Gutmann, Michael U.; Vehtari, Aki; Marttinen, Pekka;

Parallel Gaussian Process Surrogate Bayesian Inference with Noisy Likelihood Evaluations

Abstract

We consider Bayesian inference when only a limited number of noisy log-likelihood evaluations can be obtained. This occurs for example when complex simulator-based statistical models are fitted to data, and synthetic likelihood (SL) method is used to form the noisy log-likelihood estimates using computationally costly forward simulations. We frame the inference task as a sequential Bayesian experimental design problem, where the log-likelihood function is modelled with a hierarchical Gaussian process (GP) surrogate model, which is used to efficiently select additional log-likelihood evaluation locations. Motivated by recent progress in the related problem of batch Bayesian optimisation, we develop various batch-sequential design strategies which allow to run some of the potentially costly simulations in parallel. We analyse the properties of the resulting method theoretically and empirically. Experiments with several toy problems and simulation models suggest that our method is robust, highly parallelisable, and sample-efficient.

Minor changes to the text. 37 pages, 18 figures

Keywords

Parallel computing, FOS: Computer and information sciences, Computer Science - Machine Learning, Bayesian inference, Gaussian processes, Machine Learning (stat.ML), Surrogate modelling, Statistics - Computation, Machine Learning (cs.LG), Methodology (stat.ME), Statistics - Machine Learning, likelihood-free inference, expensive likelihoods, Statistics - Methodology, Computation (stat.CO), surrogate modelling, Computer and information sciences, parallel computing, Expensive likelihoods, Sequential statistical design, Likelihood-free inference, sequential experiment design, Sequential experiment design

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
14
Top 10%
Average
Top 10%
Green
gold