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NORINE: a database of nonribosomal peptides

Authors: Caboche, Ségolène; Pupin, Maude; Leclère, Valérie; Fontaine, Arnaud; Jacques, Philippe; Kucherov, Gregory;

NORINE: a database of nonribosomal peptides

Abstract

Norine is the first database entirely dedicated to nonribosomal peptides (NRPs). In bacteria and fungi, in addition to the traditional ribosomal proteic biosynthesis, an alternative ribosome-independent pathway called NRP synthesis allows peptide production. It is performed by huge protein complexes called nonribosomal peptide synthetases (NRPSs). The molecules synthesized by NRPS contain a high proportion of nonproteogenic amino acids. The primary structure of these peptides is not always linear but often more complex and may contain cycles and branchings. In recent years, NRPs attracted a lot of attention because of their biological activities and pharmacological properties (antibiotic, immunosuppressor, antitumor, etc.). However, few computational resources and tools dedicated to those peptides have been available so far. Norine is focused on NRPs and contains more than 700 entries. The database is freely accessible at http://bioinfo.lifl.fr/norine/. It provides a complete computational tool for systematic study of NRPs in numerous species, and as such, should permit to obtain a better knowledge of these metabolic products and underlying biological mechanisms, and ultimately to contribute to the redesigning of natural products in order to obtain new bioactive compounds for drug discovery.

Keywords

Internet, [SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Peptide Synthases/metabolism, ACM: J.: Computer Applications/J.3: LIFE AND MEDICAL SCIENCES, nonribosomal peptide database, Articles, Peptides/chemistry, [SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM], Life sciences, Microbiology, User-Computer Interface, Microbiologie, Sciences du vivant, Peptide Biosynthesis, Nucleic Acid-Independent, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], Peptide Synthases, Databases, Protein, Peptides, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]

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    Top 1%
    influence
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
218
Top 1%
Top 1%
Top 10%
Green
gold