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Parallel Computing
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Parallel Computing
Article . 2019 . Peer-reviewed
License: Elsevier TDM
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https://dx.doi.org/10.48550/ar...
Article . 2019
License: arXiv Non-Exclusive Distribution
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Parallelization and scalability analysis of inverse factorization using the chunks and tasks programming model

Authors: Anton G. Artemov; Elias Rudberg; Emanuel H. Rubensson;

Parallelization and scalability analysis of inverse factorization using the chunks and tasks programming model

Abstract

We present three methods for distributed memory parallel inverse factorization of block-sparse Hermitian positive definite matrices. The three methods are a recursive variant of the AINV inverse Cholesky algorithm, iterative refinement, and localized inverse factorization, respectively. All three methods are implemented using the Chunks and Tasks programming model, building on the distributed sparse quad-tree matrix representation and parallel matrix-matrix multiplication in the publicly available Chunks and Tasks Matrix Library (CHTML). Although the algorithms are generally applicable, this work was mainly motivated by the need for efficient and scalable inverse factorization of the basis set overlap matrix in large scale electronic structure calculations. We perform various computational tests on overlap matrices for quasi-linear Glutamic Acid-Alanine molecules and three-dimensional water clusters discretized using the standard Gaussian basis set STO-3G with up to more than 10 million basis functions. We show that for such matrices the computational cost increases only linearly with system size for all the three methods. We show both theoretically and in numerical experiments that the methods based on iterative refinement and localized inverse factorization outperform previous parallel implementations in weak scaling tests where the system size is increased in direct proportion to the number of processes. We show also that compared to the method based on pure iterative refinement the localized inverse factorization requires much less communication.

20 pages, 7 figures, corrected the author list

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Keywords

Computational Engineering, Finance, and Science (cs.CE), FOS: Computer and information sciences, D.1.3, FOS: Mathematics, Mathematics - Numerical Analysis, G.1.3, Numerical Analysis (math.NA), Computer Science - Computational Engineering, Finance, and Science, D.1.3; G.1.3, 65Y05, 65F30, 65F50

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
3
Average
Average
Average
Green
bronze