Few studies have registered signs of mutilation on cetaceans in Brazil, especially from shark attacks. This work describes interactions between cookiecutter sharks Isistius spp. and cetaceans through the analysis of bite records for cetacean carcasses washed ashore on the Bahia coast between 1996 and 2005. Twenty bite records were analyzed in 13 cetacean species, of which the Delphinidae family was the most frequent. After the analysis, Isistius plutodus was identified as the aggressor species on 80% of the records, followed by I. brasiliensis (20%), based on the characteristic shape of the mutilations. The areas most subject to attack in cetaceans were: flanks 40%; head and abdomen 20% each; dorsal 15%; and genital with 5%. The relatively high number of bites on the flanks was probably due to its larger area, which offered greater opportunities to the cookiecutter shark. At least three bite records were related to the possible causes of strandings in delphinids. We recommend further studies on interactions between sharks and cetaceans along the Brazilian coast.