What's Changed back to dev by @maxulysse in https://github.com/nf-core/rnavar/pull/284 CHORES: Update all modules and subworkflows by @maxulysse in https://github.com/nf-core/rnavar/pull/287 Modules/subworkflows update by @maxulysse in https://github.com/nf-core/rnavar/pull/288 update modules and subworkflows for annotation by @maxulysse in https://github.com/nf-core/rnavar/pull/289 remove unused modules by @maxulysse in https://github.com/nf-core/rnavar/pull/290 FEAT: add tests for save_align_intermeds by @maxulysse in https://github.com/nf-core/rnavar/pull/291 CHORES: reorder configs by @maxulysse in https://github.com/nf-core/rnavar/pull/292 FIX: rescue samtools stats file from all modules by @maxulysse in https://github.com/nf-core/rnavar/pull/293 improve internal tools usage by @maxulysse in https://github.com/nf-core/rnavar/pull/294 All tools can be selected via tools or skip_tools by @maxulysse in https://github.com/nf-core/rnavar/pull/295 FEAT: workflow output for multiqc_files topic by @maxulysse in https://github.com/nf-core/rnavar/pull/296 update nf-test pipeline lib improvments by @maxulysse in https://github.com/nf-core/rnavar/pull/297 Update all modules/subworkflows by @maxulysse in https://github.com/nf-core/rnavar/pull/300 Important! Template update for nf-core/tools v4.0.1 by @nf-core-bot in https://github.com/nf-core/rnavar/pull/302 Important! Template update for nf-core/tools v4.0.2 by @nf-core-bot in https://github.com/nf-core/rnavar/pull/303 ci: increase nf-test runner disk volume to 40gb by @maxulysse in https://github.com/nf-core/rnavar/pull/310 fix: correct inverted condition for removeunknownregions bed output selection by @maxulysse in https://github.com/nf-core/rnavar/pull/308 fix: add explicit parentheses and null guard in reports filter expression by @maxulysse in https://github.com/nf-core/rnavar/pull/309 fix: add missing vep_version param needed for loftee plugin path by @maxulysse in https://github.com/nf-core/rnavar/pull/307 Fix skip condition by @maxulysse in https://github.com/nf-core/rnavar/pull/313 Update all modules and subworkflows by @maxulysse in https://github.com/nf-core/rnavar/pull/306 FEAT: Megatest snapshot by @maxulysse in https://github.com/nf-core/rnavar/pull/305 prepare RC 1.3.0 by @maxulysse in https://github.com/nf-core/rnavar/pull/311 Addressing review comments by @maxulysse in https://github.com/nf-core/rnavar/pull/314 Release 1.3.0 - Silent Nostromo by @maxulysse in https://github.com/nf-core/rnavar/pull/312 Full Changelog: https://github.com/nf-core/rnavar/compare/1.2.3...1.3.0