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ZENODO
Software . 2021
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2021
Data sources: ZENODO
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GUNC: detection of chimerism and contamination in prokaryotic genomes.

Authors: Askarbek Orakov; Anthony Fullam; Luis Pedro Coelho; Supriya Khedkar; Damian Szklarczyk; Daniel R Mende; Thomas SB Schmidt; +1 Authors

GUNC: detection of chimerism and contamination in prokaryotic genomes.

Abstract

v1.0.2 Features GUNC can now be run with GTDB database Added option to download GTDB_GUNC database Input file options can be gene_calls (faa) instead of fna if --gene_calls flag is set Input genecalls can be gzipped Output maxCSS file is now sorted Bugfixes Fix version of dependancy: requests>=2.22.0 (older versions not compatable) Better error message if gunc_db does not exist checkm_merge didnt work with unless checkm qa was run with -o 2 Other Documentation updates Links to synthetic datasets added Citations for diamond and prodigal added Clarified how checkM should be run for checkm_merge Corrected command for download_db Check if fasta is given with -f option instead of list of filepaths

Keywords

Contamination, Prokaryote, Chimerism, GUNC

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
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