software . 2015

Gene–Tissue relationships from the TISSUES database

Daniel Himmelstein; Lars Juhl Jensen;
Open Source
  • Published: 01 Jan 2015
  • Publisher: Zenodo
Abstract
We have completed an initial processing of the TISSUES data (repository, notebook). The main output of our analysis is merged.tsv.gz, a table where each row is a tissue (Uberon)--gene (Entrez) pair. For each pair, we provide 5 scores: score_text: score from the text mining channel score_knowledge: score from the UniProtKB/knowledge channel score_experiment: integrated score from the experimental channel score_experiment_unbiased: integrated score from the experimental channel without immunohistochemical staining data from the Human Protein Atlas score_integrated: integrated score combining everything
Subjects
free text keywords: TISSUES, Rephetio, TISSUES, Rephetio
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Zenodo
Software . 2015
Provider: Datacite
Open Source
Zenodo
Software . 2015
Provider: Zenodo
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