v1.1.2 - 2026-06-03 Added Add param --cluster_with_reference_pool to optionally include the reference pool in the clustering step (#278) (by @nrminor, @Joon-Klaps) Template update to nf-core/tools v4.0.2 (#289) (by @Joon-Klaps) Bump version from dev to 1.1.2 for release (#292) (by @Joon-Klaps) Fixed Cast Lazymaps to Hashmaps to become thread safe with various groovy operators (#291) (by @aersoares81, @Joon-Klaps) Extract Python package versions via python -c "import X; print(X.__version__)" instead of pip show, so versions are recorded reliably across conda/pip layouts (#292) (by @Joon-Klaps) Dependencies | Dependency | Old version | New version | | ----------- | ----------- | ----------- | | nf-schema | 2.5.1 | 2.7.2 | | nft-utils | 0.0.3 | 1.0.0 | Parameters | Old parameter | New parameter | | ------------- | ------------------------------- | | | --cluster_with_reference_pool | NB: Parameter has been updated if both old and new parameter information is present. NB: Parameter has been added if just the new parameter information is present.