Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software
Data sources: ZENODO
addClaim

Reproduction of Decrop et al. 2025 — phytoplankton CNN classifier

Authors: Fouilloux, Anne;

Reproduction of Decrop et al. 2025 — phytoplankton CNN classifier

Abstract

Python port and Iberian replication of Soroye et al. 2020 Bumble bee climate exposure → local extinction Tests whether the thermal-exposure mechanism reported by Soroye, Newbold and Kerr (2020, *Science*) — an increasing frequency of temperatures exceeding species-specific historical tolerances predicts local bumble bee extinction — replicates on the Iberian Peninsula using an independent Python re-implementation of the authors' R pipeline, GBIF occurrence data, and CRU TS 3.24.01 climate. Headline result. The claim replicates: the Iberian coefficient (sc_TEI_delta = +0.48, 95 % CI [0.27, 0.69]) is positive and significant, and larger in magnitude than the continental mean Soroye reports (+0.15 in our Python-port validation on his own data). Reference paper: Soroye P., Newbold T., Kerr J. (2020). Climate change contributes to widespread declines among bumble bees across continents. *Science* 367(6478):685–688. DOI: [10.1126/science.aax8591](https://doi.org/10.1126/science.aax8591) What's in this release - `soroye_port/` — five-script Python port of Soroye's R pipeline: occurrence cleaning, 100 km equal-area presence–absence grids, sampling-effort rasters, TEI/PEI climate indices, and the mixed-effects logistic GLMM. - Two entry points: `01_clean_data.py` (Soroye's NA + Europe data, Phase 2 port validation) and `01_clean_data_iberia.py` (GBIF Iberia, Phase 3 regional replication). Scripts 02–05 are shared. - Dockerfile, Snakefile, continuous-integration smoke test, and a Jupyter Book that narrates the FORRT reproduction + replication story. What changed from v0.1.0 Replaces the earlier simplified monthly-means analysis with a line-by-line port of Soroye's five R scripts. The preliminary v0.1.0 coefficient sign was a methodology artefact and is superseded by the values above. Source DOI on Zenodo: 10.5281/zenodo.19701133 Docker image DOI on Zenodo: minted from this release (concept DOI will be linked from the README)

Powered by OpenAIRE graph
Found an issue? Give us feedback