What's Changed Ensuring that pronto definition objects are stringified (730) by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/731 Adding a notebook demonstrating statistics command. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/724 Fixed test by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/723 Added diff markdown for AddNodeToSubset by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/736 Ran formatter and minor code cleanup by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/737 Adding definition validation functionality by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/738 Adding option for non-redundant entialed relationships. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/740 Enriched mapping documentation by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/741 Adding defusedxml dependency. Fixes #743 by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/744 Refactored mappings to more generic relationships in diff markdown output by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/750 Update obo compliance suite using latest robot by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/747 Make ruff happy by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/757 Adding additional docs on the OAK expression language by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/749 Berkeley Hackathon: Enhancing semsim docs. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/753 Adding skos-xref-duplicate to obo compliance suite by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/752 Update to support new semsimian IC map functionality by @caufieldjh in https://github.com/INCATools/ontology-access-kit/pull/755 removing unneccessary quotes in expression language guide by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/762 Adding has-part glyph to config. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/765 More efficient association-based IC calculation. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/764 Pass custom IC map to Semsimian through CLI by @caufieldjh in https://github.com/INCATools/ontology-access-kit/pull/759 Adding MRCA example to expression docs by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/768 Adding link to ontogenesis chapter on annotations. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/771 Python level access to query expression language by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/769 New functionality: term usages by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/776 Making prefix mapping less strict, fixes #702 by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/761 rename edge to mapping by @twhetzel in https://github.com/INCATools/ontology-access-kit/pull/775 Solves ClassCreation duplication & formats Mappings md table properly by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/780 information content enhancements by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/781 Added change handler for kgcl.RemoveNodeFromSubset by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/783 Supporting skos mappings for simpleobo and pronto. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/766 structured_format.pattern-style permissible value creation eg for MIxS by @turbomam in https://github.com/INCATools/ontology-access-kit/pull/785 Update sql_implementation.py to include sqlachemy output in debug logging. by @DnlRKorn in https://github.com/INCATools/ontology-access-kit/pull/782 set_label will INSERT if label not already presented. Fixes #788 by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/789 Implementing NodeDeletion which was earlier a comment. by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/791 Fix test suite by @gouttegd in https://github.com/INCATools/ontology-access-kit/pull/796 Bug in calculating all_by_all_pairwise_similarity by @hrshdhgd in https://github.com/INCATools/ontology-access-kit/pull/800 Add test for all_by_all_pairwise_similarity() in semsimian using custom IC map by @justaddcoffee in https://github.com/INCATools/ontology-access-kit/pull/801 Add cache management features by @gouttegd in https://github.com/INCATools/ontology-access-kit/pull/799 Enhanced heatmap functionality by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/798 Adding a .sample operator by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/797 graph projections and subset validation by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/806 Update cli.rst (fixed very minor documentation error) by @DnlRKorn in https://github.com/INCATools/ontology-access-kit/pull/804 update docs by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/808 Remove outdated warning, fix minor typos by @ialarmedalien in https://github.com/INCATools/ontology-access-kit/pull/814 Moved Jupter notebooks to be part of sphinx docs by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/816 Adding step to build pandoc for sphinx docs by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/817 installing pandoc by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/818 Adding more docs on how to use LLMs with OAK by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/819 Adding crawl and chain commands by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/826 association graphs by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/828 Adding ability to specify obographviz config inside a crawl config by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/829 Value Set examples and docs by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/830 Add definition method to OLS implementation by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/831 Add enrichment guide to OAK documentation by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/832 Extend OntoportalImplementation with entities() and node() methods by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/833 Allow choice of closure fields in amigo by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/835 Additional utilities for handling boomer. by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/843 Fix broken links to notebooks by @justaddcoffee in https://github.com/INCATools/ontology-access-kit/pull/837 Pyproject.toml Update to python standard/UV Update For Oak by @DnlRKorn in https://github.com/INCATools/ontology-access-kit/pull/849 Add --version option to runoak by @DnlRKorn in https://github.com/INCATools/ontology-access-kit/pull/859 Adding Python 3.13 support, removing Python 3.9 support by @DnlRKorn in https://github.com/INCATools/ontology-access-kit/pull/864 [codex] migrate funowl integration to py-horned-owl by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/868 [codex] fix release build versioning by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/869 [codex] fix owl input format detection by @cmungall in https://github.com/INCATools/ontology-access-kit/pull/870 New Contributors @twhetzel made their first contribution in https://github.com/INCATools/ontology-access-kit/pull/775 @turbomam made their first contribution in https://github.com/INCATools/ontology-access-kit/pull/785 @DnlRKorn made their first contribution in https://github.com/INCATools/ontology-access-kit/pull/782 @gouttegd made their first contribution in https://github.com/INCATools/ontology-access-kit/pull/796 @ialarmedalien made their first contribution in https://github.com/INCATools/ontology-access-kit/pull/814 Full Changelog: https://github.com/INCATools/ontology-access-kit/compare/v0.6.0...v0.7.0rc1