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ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access

Authors: He, Zhiang;

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access

Abstract

ChemInformant is a Python client engineered for programmatic access to PubChem, specifically targeting high-throughput and automated data retrieval tasks. Its architecture streamlines the entire workflow from data acquisition to analysis by directly converting large, mixed-type lists of chemical identifiers into analysis-ready Pandas DataFrames. To ensure operational resilience, the package natively integrates a suite of robustness features, including persistent HTTP caching, automatic rate-limiting with exponential backoff retries, and runtime data validation using Pydantic. By systematically addressing critical limitations in existing tools—such as network instability and inefficient batch processing—and offering up to a 48-fold performance increase, ChemInformant delivers a significantly more reliable and efficient component for the modern Python cheminformatics ecosystem.

Keywords

python, pandas, api, pubchem, cache, cheminformatics, pydantic, data science, chemistry, high-throughput

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average