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GMOD/Apollo: Apollo2.1.0(JB#d3827c)

Authors: Nathan Dunn; Colin Diesh; Deepak; S2KFan; GreggHelt2; Robert Buels; Monica Munoz-Torres; +14 Authors

GMOD/Apollo: Apollo2.1.0(JB#d3827c)

Abstract

2.1.0 Official Release Some of the new features include: - Added ability to annotate a variant from VCF evidence tracks [1892](https://github.com/GMOD/Apollo/pull/1892) - Allow forced assignment of transcript to a gene [#1851](https://github.com/GMOD/Apollo/pull/1851) - Added proper Instructor and Organism Admin permission level [#1178](https://github.com/GMOD/Apollo/issues/1178) - Indicate start / stop codons with color [#1852](https://github.com/GMOD/Apollo/pull/1852) - Set the default biotype on track [#1861](https://github.com/GMOD/Apollo/issues/1861) Some important bug fixes: - Prevents setting bad translation starts and ends [#1838](https://github.com/GMOD/Apollo/issues/1838) - Fixed descriptor leak when loading bulk loading GFF3 [#1187](https://github.com/GMOD/Apollo/pull/1887) - Fixed adding ability to create sequence alterations of uneven length [#1883](https://github.com/GMOD/Apollo/issues/1883) - Fixed problem where canonical splice-sites were not recognized if sequence was being shown in lower-case [#1879](https://github.com/GMOD/Apollo/issues/1879) - In some cases when the name store is not properly configured, the location is not remembered [#1895](https://github.com/GMOD/Apollo/issues/1895) *Note* You will need to [install node 6 or better](https://nodejs.org/en/download/package-manager/). *Note* If updating your jbrowse settings from previous versions in `apollo-config.groovy` you will need to set the JBrowse to use the [currently tagged version or better](https://github.com/GMOD/Apollo/blob/master/sample-postgres-apollo-config.groovy#L113). If this is commented out, however, [the default will work](https://github.com/GMOD/Apollo/blob/master/grails-app/conf/Config.groovy#L388-L433). *Note* Some issues with new tomcat and addStore / addTracks RFC 7230 and RFC 3986. See http://genomearchitect.readthedocs.io/en/latest/Setup.html?highlight=RFC#json-in-the-url-with-newer-versions-of-tomcat The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/stable/ Note: You can find a guide upgrading existing Apollo installations here: http://genomearchitect.readthedocs.io/en/stable/Migration.html Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/ Active mailing list (apollo@lists.lbl.gov) and [archive](http://gmod.827538.n3.nabble.com/Apollo-f815553.html).

Keywords

biocuration,genome annotation,manual annotation,collaborative editing

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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