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ZENODO
Software . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
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Code and data for estimation of parameters in mathematical models of myocyte action potentials

Authors: Simitev, Radostin; Gilchrist, Rebecca J;

Code and data for estimation of parameters in mathematical models of myocyte action potentials

Abstract

This is a suite of Python codes and data for estimation of parameters in mathematical models of myocyte action potentials. The codes perform pre-processing of the data, statistical inference of parameter values in a mathematical model of action potential, and post-processing of results. The data consist of experimentally recorded action potential wave forms of rabbit ventricular myocytes. The data is due to RJ Gilchrist [orcid.org/0000-0001-5003-4362], FL Burton [orcid.org/0000-0002-6970-6250], RC Myles [orcid.org/0000-0003-4670-361X] and GL Smith [orcid.org/0000-0003-4821-9741]. The mathematical model used is [doi.org/10.1529/biophysj.104.047449]. The statistical inference method is based on a maximum-likelihood principle. The code dependencies include standard Python libraries and the myokit [myokit.org] and pints [github.com/pints-team/pints]packages. All dependencies are declared in the code by Python "import" statements. The code can be run as specified in the tcsh scripts "run_fit.sh" and "run_plot.sh".

The code and data are associated with a resarch paper currently under review for publication in a scientific journal. The description will be updated accordingly at a later date.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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