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Patient-specific Boolean models of signaling networks guide personalized treatments

Authors: Luis Tobalina; Arnau Montagud; Emmanuel Barillot; Emmanuel Barillot; Pauline Traynard; Pauline Traynard; Bence Szalai; +12 Authors

Patient-specific Boolean models of signaling networks guide personalized treatments

Abstract

AbstractProstate cancer is the second most occurring cancer in men worldwide. To better understand the mechanisms of tumorigenesis and possible treatment responses, we developed a mathematical model of prostate cancer which considers the major signalling pathways known to be deregulated.We personalised this Boolean model to molecular data to reflect the heterogeneity and specific response to perturbations of cancer patients. 488 prostate samples were used to build patient-specific models and compared to available clinical data. Additionally, eight prostate cell-line-specific models were built to validate our approach with dose-response data of several drugs.The effects of single and combined drugs were tested in these models under different growth conditions. We identified 15 actionable points of interventions in one cell-line-specific model whose inactivation hinders tumorigenesis. To validate these results, we tested nine small molecule inhibitors of five of those putative targets and found a dose-dependent effect on four of them, notably those targeting HSP90 and PI3K. These results highlight the predictive power of our personalized Boolean models and illustrate how they can be used for precision oncology.

Keywords

:Informàtica::Aplicacions de la informàtica::Bioinformàtica [Àrees temàtiques de la UPC], Male, drug combinations, QH301-705.5, Carcinogenesis, Science, Boolean models, Àrees temàtiques de la UPC::Informàtica::Aplicacions de la informàtica::Bioinformàtica, Cancer genes, Humans, Personalised treatments, HSP90 Heat-Shock Proteins, Biology (General), Precision Medicine, Càncer, Prostate cancer, Q, personalised medicine, R, Prostatic Neoplasms, Precision oncology, prostate cancer, Prostate--Cancer, Personalized medicine, logical modelling, Medicine, simulations, personalised drug, Computational and Systems Biology, Signal Transduction

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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