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ZENODO
Dataset . 2014
License: CC BY
Data sources: ZENODO
DRYAD
Dataset . 2014
Data sources: Datacite
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Pooled metagenomic sequence from human stool

Authors: Greninger, Alexander; DeRisi, Joseph;

Pooled metagenomic sequence from human stool

Abstract

141 diarrhea samples were prepared, pooled, and pyrosequenced on the Roche Genome Sequence FLX as described in "The complete genome of klassevirus – a novel picornavirus in pediatric stool" by Greninger et al (http://www.ncbi.nlm.nih.gov/pubmed/19538752). A novel member of the Picornaviridae viral family, Human klassevirus 1, was discovered in the 540,412 unique reads with an average length of 240 nt. The reads were stripped of sequences mapping with 90% or greater identity to known diarrhea-causing viruses: 6,959 reads mapped to the Adenoviridae and Caliciviridae viral families by translated BLAST. Of the remaining 533,453 unique reads, 483 derived from Human klassevirus 1. The data are provided in FASTA format.

The complete genome of klassevirus a novel picornavirus in pediatric stool. Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, DeRisi JL. Virol J. 2009 Jun 18;6:82. doi: 10.1186/1743-422X-6-82. PMID: 19538752

This dataset corresponds to the data presented in "The complete genome of klassevirus – a novel picornavirus in pediatric stool" by Greninger et al (http://www.ncbi.nlm.nih.gov/pubmed/19538752).

Keywords

metagenomics, Klassevirus, Metagenomics, Viral sequence

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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