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Other literature type . 2025
License: CC BY
Data sources: Datacite
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Other literature type . 2025
License: CC BY
Data sources: Datacite
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GROQ-seq Technical Status Report January 2025

Authors: Cortade, Dana; DeBenedictis, Erika; J. Kelly, Peter; Ross, David; Ikonomova, Svetlana P.; d'Oelsnitz, Simon; Thyer, Ross; +5 Authors

GROQ-seq Technical Status Report January 2025

Abstract

This technical report outlines the first-year progress of the GROQ-seq initiative—a high-throughput platform for quantitative protein function assays based on growth-coupled genetic circuits in Escherichia coli (E. coli). Developed collaboratively by The Align Foundation and NIST, GROQ-seq enables sequence-to-function mapping for engineered proteins at scale, supporting synthetic biology and machine learning efforts in protein design.Key innovations include:Replacement of TetA with dihydrofolate reductase (DHFR)-based circuits, achieving >100× dynamic rangeModular plasmid design using Golden Gate assemblyIntegration of inducible promoters and standardized Teknova media to improve reproducibility across biofoundry-style workflowsOnboarding and validation of seven function-specific genetic assays (e.g., for transcription factors, proteases, tRNA synthetases)These standardized, growth-based assays support large-scale generation of genotype-phenotype datasets, enabling predictive models of protein function. This work advances industrial molecular engineering of proteins, synthetic biology platforms, and collaborative data-sharing infrastructure.10.6084/m9.figshare.28963640

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
Green