Views provided by UsageCountsBenchmark dataset for CATH hierarchical clustering tools (GeMMA/FunFHMMEr, MARC, FRAN and eMMA)
Nicola Bordin; Harry Scholes; Clemens Rauer; Ian Sillitoe; Christine Orengo;
Benchmark dataset for CATH hierarchical clustering tools (GeMMA/FunFHMMEr, MARC, FRAN and eMMA)
Benchmark dataset for CATH SuperFamily 3.40.50.620 (HUPS). Contains Functional Families alignments and Hidden Markov Models generated by GeMMA/FunFHMMER, MARC, FRAN and CATH-eMMA and Python code used to assess their quality (EC purity, DOPS, Neff) and intermediate steps by the MARC and FRAN pipelines (pooling, randomisation, renaming). 3.4.50.620_full_superfamily_sequences.fasta contains all HUPs superfamily sequences, the FunFams are a subset of these. all_starting_clusters_sequences.fasta contain the sequences included in the starting clusters used in the analyses. 3.40.50.620_embedded.pt includes embeddings for the HUPs superfamily generated using the ESM2 Protein Language Model.
- University College London United Kingdom
FOS: Computer and information sciences, Protein Domains, Bioinformatics, CATH, embeddings, Clustering
FOS: Computer and information sciences, Protein Domains, Bioinformatics, CATH, embeddings, Clustering
selected citations These citations are derived from selected sources.This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).0 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Average influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Average impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Average views 1 - 1views
selected citations
Citations provided by BIP!
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Citations provided by BIP!popularityPopularity provided by BIP!
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
Popularity provided by BIP!influenceInfluence provided by BIP!
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Influence provided by BIP!impulseImpulse provided by BIP!
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
Impulse provided by BIP!viewsViews provided by UsageCounts
Views provided by UsageCounts 0
Average
Average
Average
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