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ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
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FoldingDiff generated structures (n=780, main results) and associated metadata

Authors: Kevin E. Wu; Kevin K. Yang; Rianne van den Berg; Sarah Alamdari; James Y. Zou; Alex X. Lu; Ava P. Amini;

FoldingDiff generated structures (n=780, main results) and associated metadata

Abstract

Backbone structures generated by FoldingDiff spanning lengths [50, 128). Each length has 10 randomly sampled structures for a total of 780 backbone structures. These were used to derive all results in our manuscript's main results section. In addition to structures in .pse format, we provide an excel table with the following sheets: Table containing metadata for each of the aforementioned generated structures. Metadata includes scTM designability scores using ProteinMPNN + OmegaFold and using ProteinMPNN + AlphaFold2, maximum training set TM score (similarity), structure length, and number of sheets/helices present as annotated by P-SEA. Table containing Gauss integral embeddings for each of the 780 backbones generated by FoldingDiff Table containing Gauss integral embeddings for select test set structures between 50 and 128 residues in length. These were used to compare and contextualize structures/embeddings from FoldingDiff.

Related Organizations
Keywords

FoldingDiff, Gauss integral embeddings, Protein generation

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average