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Spatial Proteomics of a Human Brain Tumour

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 13 Sep 2023Publisher:Zenodo
Authors: Davis, Simon; Scott, Connor; Oetjen, Janina; Charles, Phillip D; Kessler, Benedikt M; Ansorge, Olaf; Fischer, Roman;

doi: 10.5281/zenodo.8341891 , 10.5281/zenodo.8341890 , 10.5281/zenodo.8341909

Spatial Proteomics of a Human Brain Tumour

Abstract

Code to reproduce spatial proteomic analysis from Davis et al. "Deep topographic proteomics of a human brain tumour" The analysis is included as an Rmarkdown html file (SpatialAnalysis.html), the corresponding SpatialAnalysis.Rmd file, and the input data. Installation and running: 1. Download this directory 2. Open SpatialAnalysis.Rmd in RStudio 3. Modify the working directory to reflect the location of the SpatialAnalysis.Rmd file (line 20). Ensure 'Data' folder is present too. 4. If recalculating Moran's index and not using provided precalculated values, comment/uncomment lines as guided in the file (line 241) 5. Run all (Ctrl+Alt+R) Runtime is less than 10 minutes on an i7 laptop with 16 GB RAM and an SSD using 4 logical cores for calculation of Moran's Index

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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