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PN40024, a highly homozygous Pinot Noir inbred line, was used for T2T genome assembly. In total, we generated 39.12Gb (~65X coverage) HiFi reads by the PacBio platform. The preliminary assembly were conducted using Hifiasm on HiFi reads, and Mumer was used to order and orient the contig-level assemblies using the PN40024.v3 genome as the reference, forming 169 contigs representing 19 chromosomes. The PN_T2T genome size (494.87M) is longer than that of pn40024.v3 (426.18M). Due to the accuracy of HiFi long reads, the N50 length PN_T2T of (26.89 Mb) is 260 times higher than PN_v3 (~102Kb). For all 9423 gaps in PN_v3 assembly, PN_T2T assembly is the gap-free grape genome.To validate the quality of our assembly, K-mer and BUSCO were conducted. We used K-mer to evaluate genomic heterozygosity, estimated 99.8%. BUSCO to evaluate genomic completeness, about 98.5% of the core conserved plant genes were found complete in the genome assembly. The PN40024.T2T genome assembly: PN40024.T2T.fa The PN40024.T2T gene annotation: PN40024.gff3 The PN40024.T2T TE annotation: PN40024.TE.gff The PN40024.T2T centromere annotation: PN40024.trf.gff3 Comparison of gene annotation among PN_T2T and 12X.v0, 12X.v2, PN40024.v4, PN40024.v4.1: Gene connected list .xlsx
PN40024, grape ,plant genome ,assembly ,Pinot Noir, Pinot Noir, PN40024, genome, assembly, Pinot Noir, PN40024, genome, assmely
PN40024, grape ,plant genome ,assembly ,Pinot Noir, Pinot Noir, PN40024, genome, assembly, Pinot Noir, PN40024, genome, assmely
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