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Genotype differentiation of highly pathogenic avian influenza viruses (HPAIV) of the goose/Guangdong lineage in Germany - Derivation and deployment of reference sequences

descriptionPublicationkeyboard_double_arrow_right Other literature type 01 Jan 2023 English Publisher:Zenodo

Authors: Pohlmann, Anne; Harder, Timm;

doi: 10.5281/zenodo.8233814 , 10.5281/zenodo.10572741 , 10.5281/zenodo.14628207 , 10.5281/zenodo.10979194 , 10.5281/zenodo.15000566 , 10.5281/zenodo.8233815 , 10.5281/zenodo.15575225

Genotype differentiation of highly pathogenic avian influenza viruses (HPAIV) of the goose/Guangdong lineage in Germany - Derivation and deployment of reference sequences

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Abstract

Highly pathogenic avian influenza viruses (HPAIV) of the H5 goose/Guangdong (gs/GD) lineage have repeatedly emerged in Germany since 2006. Rooted in the respective gs/GD lineages, HPAIV in Germany have genetically diversified into a plethora of clades and subclades and evolved into an assortment of sub- and genotypes. This technical note summarizes the genotype differentiation procedure, lists the successfully assigned genotypes and supplies corresponding reference sequences.

Related Organizations

Animal Health Research Institute
Taiwan
Friedrich Loeffler Institute
Germany

Keywords

Influenza, HPAI, virus, Avian Influenza, genotype, reference

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