VESPA: Analysis of selected CPTAC datasets

Research datakeyboard_double_arrow_right Dataset 07 Aug 2023Publisher:ZenodoFunded by:NIH | Storage System for High P..., NIH | Centers for Cancer System..., NIH | High-performance compute ... +1 projects

Authors: Rosenberger, George;

doi: 10.5281/zenodo.8220610 , 10.5281/zenodo.8220609

VESPA: Analysis of selected CPTAC datasets

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Abstract

This is a supplemental dataset to the VESPA manuscript "Network-based elucidation of colon cancer drug resistance by phosphoproteomic time-series analysis". VESPA was used to reconstruct signaling networks and to conduct kinase/phosphatase activity inference for selected subsets of the following CPTAC datasets: CPTAC S037 (COAD) CPTAC S044 (ccRCC) CPTAC S046 (LUAD) CPTAC S047 (PBT) CPTAC S049 (HBV-HCC) CPTAC S058 (LSCC) CPTAC S061 (PDAC)

Related Organizations

King’s University
United States

Keywords

proteomics, CPTAC, phosphorylation, VESPA, cancer, signaling

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