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ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
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Input files for the MD simulations and free energy calculations for the article "Water Dissolved in a Variety of Polymers Studied by Molecular Dynamics Simulation and a Theory of Solutions"

Authors: Kojima, Hidekazu; Handa, Kazuya; Yamada, Kazuo; Matubayasi, Nobuyuki;

Input files for the MD simulations and free energy calculations for the article "Water Dissolved in a Variety of Polymers Studied by Molecular Dynamics Simulation and a Theory of Solutions"

Abstract

This work is supported by the Grant-in-Aid for Scientific Research (No. JP19H04206) from the Japan Society for the Promotion of Science and by the Fugaku Supercomputer Project (No. JPMXP1020200308) and the Elements Strategy Initiative for Catalysts and Batteries (No. JPMXP0112101003) from the Ministry of Education, Culture, Sports, Science, and Technology. The simulations were conducted partly using ITO at Kyushu University, supercomputers at Institute for Solid State Physics of University of Tokyo and at Research Center for Computational Science of National Institutes of Natural Science, OCTOPUS at Osaka University, and Fugaku at RIKEN Advanced Institute for Computational Science through the HPCI System Research Project (Project IDs: hp200065, hp200097, hp200120, hp210140, and hp210176).

Article: J. Phys. Chem. B. 125, 9357–9371 (2021) [DOI: 10.1021/acs.jpcb.1c04818] The structures of the homopolymers and copolymers simulated are shown in Figures 1 and S1 and Tables 2 and 3. All-atom MD simulation was carried out using GROMACS, and this repository provides the input files with the GAFF/RESP force and initial coordinate files. The free energy of water dissolution was obtained with ERmod, and the input files for the free-energy calculations are also contained. See the README files for details.

Related Organizations
Keywords

dissolution-diffusion model, solvation free energy, polymer, Gromacs, ERmod, molecular dynamics

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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