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PDB70 Structural Library and Metadata

Research datakeyboard_double_arrow_right Dataset 06 Jun 2023 English Publisher:Zenodo
Authors: Russell B Davidson; Mark Coletti; Ada Sedova;

doi: 10.5281/zenodo.7953086 , 10.5281/zenodo.8014733 , 10.5281/zenodo.8187772 , 10.5281/zenodo.7953087

PDB70 Structural Library and Metadata

Abstract

Protein structural library developed from the PDB70 sequence database as well as associated metadata for each structure. The structures associated with each entry in the PDB70 structural library are provided in a tarball. When available, the metadata for a protein has been gathered from UniProtKB flat files. A focus is given to enzyme commission (EC) number metadata as this type of ontology is of main focus for identifying and classifying enzymes within a proteome. Changelog: v1.0.2 - Added list file for structures that have active EC numbers, accounting for defunct EC numbers in UniProtKB metadata being replaced with an active EC number when relevant. v1.0.1 - Small clean up of the provided .ipynb document. v1.0.0 - Original push of the PDB70 structural database and metadata.

Related Organizations
Keywords

Protein Structures, Functional Annotation

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citations
The total number of citations received by all articles of the researcher of interest.
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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