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ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
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Petascale Homology Search for Structure Prediction - MSAs

Research datakeyboard_double_arrow_right Dataset 10 Jul 2023Publisher:Zenodo
Authors: Lee, Sewon; Kim, Gyuri;

doi: 10.5281/zenodo.8126538 , 10.5281/zenodo.8126537

Petascale Homology Search for Structure Prediction - MSAs

Abstract

Multiple sequence alignments (MSAs) of CASP15 targets used in "Petascale Homology Search for Structure Prediction" publication. Each MSA is constructed from a combination of different sequence databases, using different search tools, 1) ColabFoldDB (CFDB) using ColabFold search module, 2) Sequence Read Archive (SRA) using MMseqs2, and 3) UniRef30+BFD using HHblits (HH). Queries: Regular CASP15 TS targets, excluding TBM-easy MSAs (A3M) CFDB (cfdb.tar.gz) SRA + CFDB (sra_cfdb.tar.gz) HH + CFDB (hh_cfdb.tar.gz) HH + SRA + CFDB (hh_sra_cfdb.tar.gz)

Related Organizations
Keywords

protein structure prediction, colabfold, casp, bioinformatics

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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