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ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
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Translocation of linearized full-length proteins through an engineered nanopore under opposing electrophoretic force

Authors: Sauciuc, Adina; Morozzo della Roca, Blasco; Tadema, Matthijs Jonathan; Chinappi, Mauro; Maglia, Giovanni;

Translocation of linearized full-length proteins through an engineered nanopore under opposing electrophoretic force

Abstract

This database contains raw electrophysiology data and MD data, organised in two parts: part 1 corresponds to electrophysiology traces and part 2 corresponds to MD files. For detailed information see below. Part 1: electrophysiology data Data separated in two main categories: main text data and SI (only) data. The electrophysiology data is named in the following format: main_FnX_CytK mutant_buffer_substrate_cis_applied potential, where n = figure number and X = panel Data from the main text: Figure 2: --> C) CytK WT + S1 substrate (file names start with main_F2C_CytK WT) --> D) CytK 2E-4D (K128D K155D Q145D S151D) + S1 substrate (main_F2D...) --> E) CytK 2E-4D (K128D K155D Q145D S151D) + tzatziki substrate (main_F2E...) --> F) CytK 2E-4D (K128D K155D Q145D S151D) + mujdei substrate (main_F2F...) Figure 4: --> CytK 2E-4D (K128D K155D Q145D S151D/ 4D) + malE219a substrate (main_F4A...) --> CytK 2E-4D (K128D K155D Q145D S151D/ 4D) + H152A-GBP substrate (main_F4B...) --> CytK 2E-4D (K128D K155D Q145D S151D/ 4D) + W30G-W133L-DHFR substrate (main_F4C...) Supporting information figures general name: SI_Sx_CytK mutant_buffer_substrate_cis_applied potential, where x = number figure from supporting information Figure S4. S1 translocation through the K128D K155D CytK mutant nanopore --> SI_S4... Figure S5. S1 translocation through the K128D K155D Q145D CytK mutant nanopore --> SI_S5... Figure S6. S1 translocation through the K128D K155D T147D CytK mutant nanopore --> SI_S6... Figure S7. Translocation of S1 through the 2E-1D-1Q-Q122D-CytK nanopore --> SI_S7... Figure S8. Translocation of S1 through 2E-4D-CytK nanopores --> see F2D main text (main_F2D...) Figure S9. Tzatziki and the CytK 2E-2D nanopore --> SI_S9... Figure S10. Tzatziki translocation through the K128D Q145D S151D K155D CytK nanopore --> see F2D main text (main_F2E...) Figure S11. Tzatziki translocation through the K128D K155D Q145D CytK nanopore --> SI_S11... Figure S12. Tzatziki translocation through the K128D K155D T147D CytK mutant nanopore --> SI_S12... Figure S14. Translocation of mujdei through 2E-4D-CytK nanopores --> see F2D main text (main_F2F...) Figure S22. Translocation of malE219a through 2E-4D-CytK nanopores in 2 M urea --> see F4A main text (main_F4A...) Figure S23: Translocation GBP H152A through the 2E-4D CytK nanopore in 2.4 M urea --> see F4B main text (main_F4B...) Figure S24. Translocation of W30G-W133L-DHFR through 2E-4D-CytK nanopore in 2.6 M urea --> see F4B main text (main_F4B...) Figure S26. MalE219a translocation through the 2E-4D CytK mutant in 1 M and 1.8 M Gu.HCl --> SI_S26... (1 M GuHCl and 1.8 M GuHCl are included in the file name) Figure S27: WT-CytK tested with the malE219a and malE219aD10ssrA proteins in 1.5 M Gu.HCl --> SI_S27... Original SDS-PAGE gels of the substrates in a powerpoint file Part 2: MD data The data corresponding to the MD simulations is bundled in a zip file named MD_files.zip This file contains the following subfiles linked to main text Figure 3: panel A: - main_F3A_CytK_E2-D2 - main_F3A_CytK_E2-D3 - main_F3A_CytK_E2-D4 - main_F3A_CytK_WT panels C, D and E: - main_F3CDE_CytK_E2-D4_rep1 - main_F3CDE_CytK_E2-D4_rep2 - main_F3CDE_CytK_E2-D4_rep3 and files linked to the supporting information Figure S20: - SI_S20_ABC_CytK_E2-D4_TZA11_rep1 - SI_S20_ABC_CytK_E2-D4_TZA11_rep2 - SI_S20_ABC_CytK_E2-D4_TZA11_rep3

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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