Data The csv file "2023-06-27_data.csv" contains genetic profiles for all olive trees analyzed in the publication: Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion". The genotypes are provided in the GenAlEx format. Code Code is provided in the compressed folder "Tourvas_et_al_Olive". It is structured as a R project and can easily be opened, after decompressing, from the Rstudio interface. If you prefer to review and/or reuse code you can access it from the "analysis" folder inside the "Tourvas_et_al_Olive" folder. Computational Environment A tarball for the Docker image "tourvas_et_al_olive" is also provided. This is the recommended way to reproduce the results of the publication: "Wild olive tree genetic diversity in Greece: a diverse resource in danger of erosion". It is assumed that you already have Docker installed on your system. If not, please visit https://docs.docker.com/get-started/ To use it: download the image file tourvas_et_al_olive.tar load it with docker with the command: docker load --input tourvas_et_al_olive.tar then launch the Docker container with the command: docker run --name popgen --rm -dp 8787:8787 -e ROOT=TRUE -e DISABLE_AUTH=true -v "`pwd`":/home/rstudio/working nikostourvas/tourvas_et_al_olive start your favorite web browser and go to: http://localhost:8787/ from the bottomright pane of the Rstudio server click on the directory "Tourvas_et_al_Olive" and open the project by clicking on the "Tourvas_et_al_Olive.Rproj" file launch the scripts inside the "analysis" directory and run them to reproduce results

This research has been financed by Greek national funds through the Public Investments Program (PIP) of General Secretariat for Research & Technology (GSRT), under the Emblematic Action "The Οlive Road" (project code: 2018ΣΕ01300000) and by project Crown Genome, funded by the General Secretariat for Research and Innovation, Greece and the Aristotle University of Thessaloniki (project code 40220). Results presented in this work have been produced using the Aristotle University of Thessaloniki (AUTh) High Performance Computing Infrastructure and Resources.