YosefLab/Thymus_CITE-seq: Thymus_CITE-seq Reproducibility

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 30 Jun 2023Publisher:ZenodoFunded by:NIH | OPTICAL, FLUIDIC, AND MOL..., NIH | Spatial and temporal mapp..., NIH | A Comprehensive Center fo... +1 projects

Authors: Zoë Steier;

Code repository: https://github.com/YosefLab/Thymus_CITE-seq/tree/v1.0.0

doi: 10.5281/zenodo.12583813 , 10.5281/zenodo.8102050 , 10.5281/zenodo.8102049

YosefLab/Thymus_CITE-seq: Thymus_CITE-seq Reproducibility

- Summary
- Metrics

Abstract

Single-cell multi-omic analysis of thymocyte development reveals drivers of CD4/CD8 lineage commitment Nature Immunology, 2023. https://doi.org/10.1038/s41590-023-01584-0 This repository contains code for the analysis performed in this manuscript. v1.1.0 adds three data files: post_adata_annotated.h5ad: anndata object containing the full data set adata_positiveselection_filt.h5ad: anndata object containing the positive selection subset of the data pseudotime_slingshot_binned_20210202.csv: pseudotime metadata

Impact byBIP!

	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	1
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average