If you use any of these data, please cite the corresponding publication: Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation Pekayvaz et al., Immunity, 2023 . ( https://doi.org/10.1016/j.immuni.2023.08.002 ) scRNA-seq data processed: processed_kidney_seurat.Rds processed_lung_seurat.Rds count matrices: sample_M1_raw_feature_bc_matrix.h5 sample_M2_raw_feature_bc_matrix.h5 script: process_sctransform.R RNA-seq macrophages: macs_control_vs_knockout.hisat2.DirectDESeq2.tsv|xlsx (count data and DESeq2 results) aorta: aorta_control_vs_knockout.hisat2.DirectDESeq2.tsv|xlsx (count data and DESeq2 results) Dead vs. Living: peri_Dead_vs_Living.exon_all.DirectDESeq2.tsv|xlsx (count data and DESeq2 results)