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GenomeBuildPredictor: R package that predicts the genome build version of genomic track files.

Authors: Chakravarthi Kanduri; Diana Domanska; Eivind Hovig; Geir Kjetil Sandve;

GenomeBuildPredictor: R package that predicts the genome build version of genomic track files.

Abstract

Genomic locations are represented as coordinates on a specific genome build version, but the build information is frequently missing when coordinates are provided. This tool accompanies our manuscript that discussed the importance of genome build information in correctly interpreting and analysing the genomic track files. Although not a substitute for the best practices, this tool attempts to predict the genome build version of genomic track files, if any of the sequence coordinates in the input track file are unique to a genome build version. This tool builds upon the strengths of existing Bioconductor packages that enable scalable genomic analyses to predict the genome build version of genomic track files. For more information about scalable genomics with Bioconductor, see references [1,2]. As an alternative to this R package, we also provide the tool through a web-interface, which supports more species. For more information, see here: http://hyperbrowser.uio.no/refgenome

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Keywords

genome build, reference genome, genomic track files

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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