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ZENODO
Software . 2023
Data sources: Datacite
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ZENODO
Software . 2023
Data sources: ZENODO
Claim

nf-core/methylseq: [2.4.0] Gillespie Gaia

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 12 Jun 2023Publisher:Zenodo
Authors: Phil Ewels; Patrick Hüther; Sateesh_Peri; Nathan Spix; Edmund Miller; nf-core bot; Matthias Hörtenhuber; +16 Authors
Code repository: https://github.com/nf-core/methylseq/tree/2.4.0

doi: 10.5281/zenodo.8029942

nf-core/methylseq: [2.4.0] Gillespie Gaia

Abstract

Pipeline Updates Updated template to nf-core/tools v2.8 Add --bamqc_regions_file parameter for targeted methylation sequencing data #302 ✨ Add NF-TEST tests and snapshots for the pipeline test profile #310 Bug fixes & refactoring 🛠️ update index file channels to explicit value channels #310 🐛 fix params.test_data_base in test and test_full configs #310 🤖 GitHub Actions CI - pull_reqest to dev tests with NXF_VER latest-everything #310 🤖 GitHub Actions CI - pull_reqest to master tests with NXF_VER 22.10.1 & latest-everything #310 🤖 GitHub Actions CI - fail-fast set to false #310 🐛 get to the bottom of index tests #278 ✨ Support for Bismark methylation extraction ignore and ignore_3prime parameters when ignore_r1 or ignore_3prime_r1 are greater than 0. #322 🛠️ rename ignore -> ignore_r1 and ignore_3prime -> ignore_3prime_r1 params #322 🐛 removed unused directory #297

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