[3.12.0] - 2023-06-02 Credits Special thanks to the following for their contributions to the release: Adam Talbot Esha Joshi Ghepardo Matthias Zepper Maxime Garcia Rob Syme Thank you to everyone else that has contributed by reporting bugs, enhancements or in any other way, shape or form. Enhancements & fixes [#1011] - FastQ files from UMI-tools not being passed to fastp [#1018] - Ability to skip both alignment and pseudo-alignment to only run pre-processing QC steps. PR #1016 - Updated pipeline template to nf-core/tools 2.8 PR #1025 - Add public_aws_ecr.config to source mulled containers when using public.ecr.aws Docker Biocontainer registry PR #1038 - Updated error log for count values when supplying --additional_fasta PR #1042 - revert samtools_sort modules to no memory assignement Parameters Old parameter New parameter --skip_pseudo_alignment NB: Parameter has been updated if both old and new parameter information is present. NB: Parameter has been added if just the new parameter information is present. NB: Parameter has been removed if new parameter information isn't present. Software dependencies Dependency Old version New version fastp 0.23.2 0.23.4 samtools 1.16.1 1.17 NB: Dependency has been updated if both old and new version information is present. NB: Dependency has been added if just the new version information is present. NB: Dependency has been removed if new version information isn't present.