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DOX_BDW: Nonfitting prediction of protein–ligand binding affinity

Authors: Jiaqi, Liu; Jian, Wan; Yanliang, Ren; Xubo, Shao; Xin, Xu; Li, Rao;

DOX_BDW: Nonfitting prediction of protein–ligand binding affinity

Abstract

structures.zip: including the coordinates of all optimized proteinligand complex structure obtained by DOX_BDW calculation. (compressed PDB file). These pdb files could also be used as input for the binding energy calculation,as illustrated in SI section 8. mdinput.zip: Including the input files,parameter files, topology files needed to run MD simulation for water mapping, as illustrated in SI section 8. Note that all of the parameter files and topology files would be automatically generated using the RUNMD program we uploaded with the example file. example.zip: The programs and input files needed to run an example, as illustrated in SI section 9. And all the output files except MD trajectories are in there,too.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
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