[1.0.0] - Czechoslovakian Wolfdog - [2023-05-18] Initial release of sanger-tol/genomenote, created with the nf-core template. Enhancements & fixes Created with nf-core/tools template v2.8.0. Subworkflow to create HiC contact maps using Cooler. Subworkflow to create summary table using BUSCO, MerquryFK, NCBI datasets, and Samtools. Parameters Old parameter New parameter --lineage_tax_ids --use_work_dir_as_temp NB: Parameter has been updated if both old and new parameter information is present. NB: Parameter has been added if just the new parameter information is present. NB: Parameter has been removed if new parameter information isn't present. Software dependencies Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference. Dependency Old version New version datasets 14.2 15.12 FastK f18a4e6d2207539f7b84461daebc54530a9559b0 427104ea91c78c3b8b8b49f1a7d6bbeaa869ba1c MerquryFK 8ae344092df5dcaf83cfb7f90f662597a9b1fc61 d00d98157618f4e8d1a9190026b19b471055b22e NB: Dependency has been updated if both old and new version information is present. NB: Dependency has been added if just the new version information is present. NB: Dependency has been removed if version information isn't present.