The Covid-19 pandemic and crisis management dominate media and scholarly literature since 2020. The literature review shows that human rights, their limitation(s) and suspension as well as impact(s) of crisis management on democracy, legitimacy, diverse (social) minorities, marginalized groups and border communities are often mentioned, but seldom focussed on. LEGITIMULT project on legitimate democratic crisis governance in multilevel systems combines multi-, inter- and transdisciplinary approaches, qualitative and quantitative research methods in studying those complex and dynamic phenomena. As a deliverable of this project, the paper focuses on the impact(s) of crisis management, policies and measures (particularly restrictive and repressive ones), on human rights, minority rights and protection of minorities as well as on the principle of non-discrimination. Qualitative approaches and methods prove the most suitable for studying the perceptions of persons belonging to diverse minorities on democracy and legitimacy of crisis management and governance in respective environments.